This blog is going to give description of steps followed in solving the protein domain classification problem using deep learning. We’ll be dealing with the PFAM data which is provided by kaggle .

PLAT domain-containing protein 1. Gene. PLAT1. Organism. Arabidopsis thaliana (Mouse-ear cress) Status. Reviewed-Annotation score: -Experimental evidence at protein level i. Function i. Positive regulator of abiotic stress tolerance involved in the regulation of

2019-07-01 · Similarities Between Motif and Domain in Protein Structure Motif and domain are two components of a protein structure. They have both structural and functional importance in the protein structure. Also, both are made up of a chain of amino acids linked by peptide bonds. Moreover, they are made up Domains have proved so fruitful in explaining both the structure and the function of proteins that the concept is certain to survive in one form or another. At some time in the near future it will presumably acquire full scientific respectability with a verifiable definition in terms of either folding units or genetic units or perhaps both. Phylogeny and Functions of LOB Domain Proteins in Plants. Lateral organ boundaries (LOB) domain (LBD) genes, a gene family encoding plant-specific transcription factors, play important roles in plant growth and development.

3- Often has a specific function associated with it. Protein domains often correspond to structural domains which are self-stabilizing and fold independently of the rest of the protein chain. They may occur independently or as part of complex multidomain protein architectures which evolve by domain accretion, domain loss or domain recombination. The macro domain protein family: structure, functions, and their potential therapeutic implications Macro domains are ancient, highly evolutionarily conserved domains that are widely distributed throughout all kingdoms of life. A domain in protein structure is the tertiary structure of a protein. Moreover, it forms, exists, and functions independently from the other components of the protein. NCBI Conserved Domain Search Search for Conserved Domains within a protein or coding nucleotide sequence Enter protein or nucleotide query as accession, gi, or sequence in FASTA format.

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Mar 5, 2007 KNL-2 defines a new conserved family of Myb DNA-binding domain–containing proteins. The human homologue of KNL-2 is also specifically

Protein domain discovery has been progressing steadily over the past 30 years. PDZ domains are protein-interaction domains that are often found in multi-domain scaffolding proteins. PDZ-containing scaffolds assemble specific proteins into large molecular complexes at defined locations in the cell. In the postsynaptic density of neuronal excitatory synapses, PDZ proteins such a … Media in category "Protein domains" The following 147 files are in this category, out of 147 total.

1. Selecting the range of sequence to clone and express · Is the protein globular, non-globular, membrane or multi-domain? · Have you guarded against errors,

The human homologue of KNL-2 is also specifically Conserved domains database (CDD) is a protein annotation resource that consists of a collection of well-annotated multiple sequence alignment models for Protein Domains. Proteindomän.

I am sorry if these questions sound trivial !
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PLAT1.

3- Often has a specific function associated with it. 2018-12-11 · Protein domains often correspond to structural domains which are self-stabilizing and fold independently of the rest of the protein chain.
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Pleckstrin homology domain (PH domain) or (PHIP) is a protein domain of approximately 120 amino acids that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton.

2019-07-30 We have identified 33 LIM proteins involved in multiple physiological functions (Fig. 4) in cardiomyocytes and in time they will probably be recognised as contributors to heart development and heart failure (Fig. 2).This family of LIM domain proteins is unique due to their diverse sequence structure (Fig 3).These data lead us to several conclusions about the roles of LIM domain proteins. BlastP simply compares a protein query to a protein database.

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Apr 11, 2012 “CATH (class, architecture, topology, homology) is a hierarchical protein domain classification (1) where domains are classified manually by

DOMINE contains a total of 26,219 domain-domain interactions (among 5,410 domains) out of which 6,634 are inferred from PDB entries, and 21,620 are predicted by at least one computational approach.

Protein domains often correspond to structural domains which are self-stabilizing and fold independently of the rest of the protein chain. They may occur independently or as part of complex multidomain protein architectures which evolve by domain accretion, domain loss or domain recombination.

Moreover, they are made up Domains have proved so fruitful in explaining both the structure and the function of proteins that the concept is certain to survive in one form or another. At some time in the near future it will presumably acquire full scientific respectability with a verifiable definition in terms of either folding units or genetic units or perhaps both. Phylogeny and Functions of LOB Domain Proteins in Plants. Lateral organ boundaries (LOB) domain (LBD) genes, a gene family encoding plant-specific transcription factors, play important roles in plant growth and development. At present, though there have been a number of genome-wide analyses on LBD gene families and functional studies Search for Conserved Domains within a protein or coding nucleotide sequence. Enter protein or nucleotide query as accession, gi, or sequence in FASTA format.